FAME Metagenomics workshop 2022

Metagenome assembled genomes (MAG) Analysis

Link to presentation

Once the MAGs are generated, here are some downstream analysis that you can perform

Step 1: Download the MAGs generated to laptop

Step 2: Upload files to PATRIC

PATRIC is web service available for microbial genome annotations


Setup workspace

Upload files

Check the uploads

Annotating bins/MAGs

Patience The command was submit to the cluster, waiting for the magic to happen

Downloading the protein sequences

Next steps…

The next few steps are dependent on your research questions. So I will just demonostrate the some of the data PATRIC generates that could be useful

Here is a Youtube video recorded by Amber Skye on some downstream analysis that you can perform.