Download the fastq files for workshop

Goto https://cloudstor.aarnet.edu.au/plus/s/ZAwa5VsRZYjqpai

• select all the files
• click on “Download”

The files downlaod to your laptop under “subsamples.tar”

Let’s transfer them to the server provided for workshop

On your laptop, use WinSCP https://winscp.net/eng/index.php to transfer file

If you are using command line, on your laptop

scp –r subsample.tar username@115.146.84.253:~/.

Confirm files were transfered to the server

Log in to the server

• use ssh command line

  ssh user@115.146.84.253
  

• Use putty or Mobaterm to login instead

  • Download putty, https://www.putty.org
  • Download Mobaxterm, https://mobaxterm.mobatek.net/download.html

Once logged in, type the command

ls 

This should list the folder “subsample.tar”

Decompress the file

Type in the below command

tar -xvf subsample.tar
ls

The decompressed folder will be labelled “subsample”.

Let’s learn how to use a text editor nano

Save a file called filename.txt with the 4 sample names

Commands to do this,

nano filename.txt

Add sample names

SRR1237780
SRR1237781
SRR1237782
SRR1237783

Save file – Ctrl+O

Exit file – Ctrl+X

Yay, all done with this tutorial!