FAME Metagenomics workshop 2022
Welcome to the FAME metagenomics workshop for 2022, sponsored by SAGC! Follow the links in the schedule table to access the workshop material for that session. Click ‘Home’ to return here.
| Time | Topic | Presenter |
|---|---|---|
| 0900-0915 | Welcome and Introductions | Rob Edwards |
| 0900-1000 | Introduction to computing | Bhavya Papudeshi |
| 1000-1030 | QC/QA hands-on | Bhavya Papudeshi |
| 1030-1100 | Morning coffee | |
| 1100-1130 | Introduction to metagenomics (slides) | Michael Doane |
| 1130-1230 | FOCUS hands-on | Michael Doane |
| 1230-1330 | Lunch | |
| 1330-1400 | Functional analysis | Susie Grigson/Michael Doane |
| 1400-1430 | Super-Focus hands-on | Susie Grigson/Michael Doane |
| 1430-1500 | Sequence Assembly and Evaluation with QUAST (slides) | Vijini Mallawaarachchi/Bhavya Papudeshi |
| 1500-1530 | Afternoon tea | |
| 1530-1600 | Metagenomic binning (slides) | Vijini Mallawaarachchi |
| 1600-1700 | Binning hands-on | Vijini Mallawaarachchi |
| Time | Topic | Presenter |
|---|---|---|
| 0900-0930 | Recap | Everyone |
| 0930-1000 | MAG annotation using PATRIC | Bhavya Papudeshi/Susie Grigson |
| 1000-1030 | KEGG mapper | Bhavya Papudeshi |
| 1030-1100 | Morning coffee | |
| 1100-1200 | AMR and WW | Erica Donner |
| 1200-1230 | AMR finding | Michael Roach |
| 1230-1330 | Lunch | |
| 1330-1400 | Data visualization in R and Python | Michael Roach |
| 1400-1500 | Hands-on data viz part 1 | Michael Roach |
| 1500-1530 | Afternoon tea | |
| 1530-1645 | Hands-on data viz part 2 | Michael Roach |
| 1645-1700 | Wrap up and summary | Rob Edwards |
| Time | Topic | Presenter |
|---|---|---|
| 0900-0930 | Recap of Day 1 and 2 | Rob Edwards |
| 0930-1000 | Introduction to workflows | Nathan Watson-Haigh |
| 1000-1030 | Snakemake | Nathan Watson-Haigh |
| 030-1100 | Morning coffee | |
| 1100-1200 | Snakemake hands on | Nathan Watson-Haigh |
| 1230-1330 | Lunch | |
| 1330-1400 | SAGC | Sen Wang |
| 1400-1500 | Travel to Adelaide Tree Climb | |
| 1500-1630 | Adelaide Tree Climb | |
| 1700 | Drinks at the Goodwood Park HotelSAGC |